IL_9B0W_040

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9B0W|1|L5|C|1214, 9B0W|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_040 not in the Motif Atlas

Geometric match to IL_4KTG_005

Geometric discrepancy: 0.3558

The information below is about IL_4KTG_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9B0W|1|L5|C|1082
9B0W|1|L5|U|1083
9B0W|1|L5|C|1084
*
9B0W|1|L5|G|1213
9B0W|1|L5|C|1214
9B0W|1|L5|C|1215
9B0W|1|L5|C|1216
9B0W|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29