IL_9B0W_230

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_230 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.0931

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

9B0W|1|S2|A|922
9B0W|1|S2|G|923
*
9B0W|1|S2|C|1019
9B0W|1|S2|A|1020
9B0W|1|S2|U|1021
9B0W|1|S2|U|1022

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain Sb

Small ribosomal subunit protein eS27