IL_9B11_005
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B11_005 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.1732
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9B11|1|L5|C|30
9B11|1|L5|U|31
9B11|1|L5|G|32
9B11|1|L5|A|33
9B11|1|L5|A|34
9B11|1|L5|U|35
9B11|1|L5|U|36
9B11|1|L5|U|37
*
9B11|1|L5|A|44
9B11|1|L5|U|45
9B11|1|L5|U|46
9B11|1|L5|A|47
9B11|1|L5|G|48
9B11|1|L5|U|49
9B11|1|L5|C|50
9B11|1|L5|A|51
9B11|1|L5|G|52
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lj
- 60S ribosomal protein L37
- Chain Lo
- 60S ribosomal protein L36a
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