3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GAAC*GAGUUCAAGAGGGC
Length
18 nucleotides
Bulged bases
9B11|1|L5|G|409, 9B11|1|L5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_016 not in the Motif Atlas
Geometric match to IL_8CRE_015
Geometric discrepancy: 0.111
The information below is about IL_8CRE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

9B11|1|L5|G|387
9B11|1|L5|A|388
9B11|1|L5|A|389
9B11|1|L5|C|390
*
9B11|1|L5|G|401
9B11|1|L5|A|402
9B11|1|L5|G|403
9B11|1|L5|U|404
9B11|1|L5|U|405
9B11|1|L5|C|406
9B11|1|L5|A|407
9B11|1|L5|A|408
9B11|1|L5|G|409
9B11|1|L5|A|410
9B11|1|L5|G|411
9B11|1|L5|G|412
9B11|1|L5|G|413
9B11|1|L5|C|414

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LP
60S ribosomal protein L17
Chain LY
60S ribosomal protein L26
Chain Ll
60S ribosomal protein L39

Coloring options:


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