3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GG*CGACC
Length
7 nucleotides
Bulged bases
9B11|1|L5|G|666, 9B11|1|L5|A|667
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_024 not in the Motif Atlas
Geometric match to IL_6DTD_003
Geometric discrepancy: 0.3706
The information below is about IL_6DTD_003
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.2
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
44

Unit IDs

9B11|1|L5|G|487
9B11|1|L5|G|488
*
9B11|1|L5|C|665
9B11|1|L5|G|666
9B11|1|L5|A|667
9B11|1|L5|C|668
9B11|1|L5|C|669

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain Lr
60S ribosomal protein L28

Coloring options:


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