3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
9B11|1|L5|A|943, 9B11|1|L5|A|944
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_031 not in the Motif Atlas
Geometric match to IL_7Q80_003
Geometric discrepancy: 0.2421
The information below is about IL_7Q80_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

9B11|1|L5|A|723
9B11|1|L5|C|724
*
9B11|1|L5|G|942
9B11|1|L5|A|943
9B11|1|L5|A|944
9B11|1|L5|U|945

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LF
60S ribosomal protein L7

Coloring options:


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