IL_9B11_058

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_058 not in the Motif Atlas

Homologous match to IL_8CRE_033

Geometric discrepancy: 0.0984

The information below is about IL_8CRE_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9B11|1|L5|C|1551
9B11|1|L5|G|1552
9B11|1|L5|A|1553
9B11|1|L5|A|1554
9B11|1|L5|G|1555
*
9B11|1|L5|U|1572
9B11|1|L5|G|1573
9B11|1|L5|G|1574
9B11|1|L5|A|1575
9B11|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a