3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GAUGG*CGUU
Length
9 nucleotides
Bulged bases
9B11|1|L5|U|2485
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_096 not in the Motif Atlas
Geometric match to IL_7VYX_002
Geometric discrepancy: 0.3466
The information below is about IL_7VYX_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9B11|1|L5|G|2483
9B11|1|L5|A|2484
9B11|1|L5|U|2485
9B11|1|L5|G|2486
9B11|1|L5|G|2487
*
9B11|1|L5|C|2492
9B11|1|L5|G|2493
9B11|1|L5|U|2494
9B11|1|L5|U|2495

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LX
60S ribosomal protein L23a

Coloring options:


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