IL_9B11_102

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

9B11|1|L5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_102 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1159

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9B11|1|L5|C|2646
9B11|1|L5|A|2647
9B11|1|L5|G|2648
*
9B11|1|L5|C|2685
9B11|1|L5|G|2686
9B11|1|L5|U|2687
9B11|1|L5|G|2688

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34