3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UCCUG*CGUCA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_165 not in the Motif Atlas
Geometric match to IL_8S95_002
Geometric discrepancy: 0.3355
The information below is about IL_8S95_002
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

9B11|1|L5|U|4885
9B11|1|L5|C|4886
9B11|1|L5|C|4887
9B11|1|L5|U|4888
9B11|1|L5|G|4889
*
9B11|1|L5|C|4930
9B11|1|L5|G|4931
9B11|1|L5|U|4932
9B11|1|L5|C|4933
9B11|1|L5|A|4934

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a

Coloring options:


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