IL_9B11_179
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B11_179 not in the Motif Atlas
- Homologous match to IL_9DFE_113
- Geometric discrepancy: 0.1549
- The information below is about IL_9DFE_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
9B11|1|L7|A|32
9B11|1|L7|U|33
9B11|1|L7|C|34
9B11|1|L7|U|35
9B11|1|L7|C|36
*
9B11|1|L7|G|41
9B11|1|L7|A|42
9B11|1|L7|U|43
9B11|1|L7|C|44
9B11|1|L7|U|45
Current chains
- Chain L7
- 5S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- 60S ribosomal protein L11
Coloring options: