IL_9B11_203

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_203 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3941

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9B11|1|S2|C|317
9B11|1|S2|A|318
9B11|1|S2|C|319
*
9B11|1|S2|G|332
9B11|1|S2|G|333

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6