3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAG*CCUG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_213 not in the Motif Atlas
Geometric match to IL_4N0T_004
Geometric discrepancy: 0.2026
The information below is about IL_4N0T_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_32983.1
Basepair signature
cWW-L-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9B11|1|S2|C|532
9B11|1|S2|A|533
9B11|1|S2|G|534
*
9B11|1|S2|C|549
9B11|1|S2|C|550
9B11|1|S2|U|551
9B11|1|S2|G|552

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain Se
Small ribosomal subunit protein eS30

Coloring options:


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