IL_9B11_214

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

9B11|1|S2|A|536, 9B11|1|S2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_214 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.236

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9B11|1|S2|G|535
9B11|1|S2|A|536
9B11|1|S2|C|537
*
9B11|1|S2|G|546
9B11|1|S2|G|547
9B11|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS30