3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
GAAAAAAUU*ACCGCAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_225 not in the Motif Atlas
Homologous match to IL_8CRE_430
Geometric discrepancy: 0.3924
The information below is about IL_8CRE_430
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_59049.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

9B11|1|S2|G|807
9B11|1|S2|A|808
9B11|1|S2|A|809
9B11|1|S2|A|810
9B11|1|S2|A|811
9B11|1|S2|A|812
9B11|1|S2|A|813
9B11|1|S2|U|814
9B11|1|S2|U|815
*
9B11|1|S2|A|849
9B11|1|S2|C|850
9B11|1|S2|C|851
9B11|1|S2|G|852
9B11|1|S2|C|853
9B11|1|S2|A|854
9B11|1|S2|G|855
9B11|1|S2|C|856

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SL
40S ribosomal protein S11
Chain SW
40S ribosomal protein S15a

Coloring options:


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