3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AG*CAUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_229 not in the Motif Atlas
Geometric match to IL_6N5P_003
Geometric discrepancy: 0.0961
The information below is about IL_6N5P_003
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

9B11|1|S2|A|922
9B11|1|S2|G|923
*
9B11|1|S2|C|1019
9B11|1|S2|A|1020
9B11|1|S2|U|1021
9B11|1|S2|U|1022

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain Sb
Small ribosomal subunit protein eS27

Coloring options:


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