3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_235 not in the Motif Atlas
Homologous match to IL_8CRE_437
Geometric discrepancy: 0.0967
The information below is about IL_8CRE_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31359.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

9B11|1|S2|A|1042
9B11|1|S2|G|1043
9B11|1|S2|G|1044
9B11|1|S2|U|1045
9B11|1|S2|U|1046
9B11|1|S2|C|1047
*
9B11|1|S2|G|1071
9B11|1|S2|U|1072
9B11|1|S2|U|1073

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LA
60S ribosomal protein L8
Chain SO
Small ribosomal subunit protein uS11
Chain Sa
40S ribosomal protein S26

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