3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
9B11|1|S2|C|1331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_253 not in the Motif Atlas
Geometric match to IL_8CRE_452
Geometric discrepancy: 0.137
The information below is about IL_8CRE_452
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

9B11|1|S2|U|1329
9B11|1|S2|G|1330
9B11|1|S2|C|1331
9B11|1|S2|A|1332
9B11|1|S2|U|1333
*
9B11|1|S2|A|1498
9B11|1|S2|U|1499
9B11|1|S2|G|1500

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SD
Small ribosomal subunit protein uS3
Chain SK
40S ribosomal protein S10
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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