3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UAC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_266 not in the Motif Atlas
Homologous match to IL_8CRE_464
Geometric discrepancy: 0.1885
The information below is about IL_8CRE_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9B11|1|S2|U|1560
9B11|1|S2|A|1561
9B11|1|S2|C|1562
*
9B11|1|S2|G|1573
9B11|1|S2|C|1574
9B11|1|S2|G|1575

Current chains

Chain S2
18S rRNA

Nearby chains

Chain ST
40S ribosomal protein S19

Coloring options:


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