IL_9B11_269

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9B11|1|S2|C|1701, 9B11|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_269 not in the Motif Atlas

Homologous match to IL_8CRE_466

Geometric discrepancy: 0.0932

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9B11|1|S2|C|1700
9B11|1|S2|C|1701
9B11|1|S2|G|1702
*
9B11|1|S2|C|1833
9B11|1|S2|A|1834
9B11|1|S2|A|1835
9B11|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

eEF2

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26