IL_9B24_011

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

9B24|1|A|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1579

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9B24|1|A|G|144
9B24|1|A|G|145
9B24|1|A|A|146
9B24|1|A|U|147
9B24|1|A|A|148
9B24|1|A|A|149
9B24|1|A|G|150
*
9B24|1|A|U|165
9B24|1|A|C|166
9B24|1|A|U|167
9B24|1|A|A|168
9B24|1|A|A|169
9B24|1|A|U|170
9B24|1|A|A|171
9B24|1|A|C|172

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20