IL_9B24_027

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

9B24|1|A|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_027 not in the Motif Atlas

Homologous match to IL_6CZR_139

Geometric discrepancy: 0.38

The information below is about IL_6CZR_139

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

9B24|1|A|G|634
9B24|1|A|A|635
*
9B24|1|A|U|731
9B24|1|A|G|732
9B24|1|A|A|733
9B24|1|A|C|734

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain O

Small ribosomal subunit protein uS15