IL_9B24_029

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

9B24|1|A|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_029 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1178

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9B24|1|A|C|642
9B24|1|A|A|643
9B24|1|A|G|644
9B24|1|A|G|645
9B24|1|A|G|646
*
9B24|1|A|U|720
9B24|1|A|G|721
9B24|1|A|G|722
9B24|1|A|G|723

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain F

Small ribosomal subunit protein bS6

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18B