IL_9B24_035

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GACGGG*UUGUAC

Length

12 nucleotides

Bulged bases

9B24|1|A|G|908, 9B24|1|A|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_035 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3762

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

9B24|1|A|G|904
9B24|1|A|A|905
9B24|1|A|C|906
9B24|1|A|G|907
9B24|1|A|G|908
9B24|1|A|G|909
*
9B24|1|A|U|1373
9B24|1|A|U|1374
9B24|1|A|G|1375
9B24|1|A|U|1376
9B24|1|A|A|1377
9B24|1|A|C|1378

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain E

Small ribosomal subunit protein uS5