IL_9B24_047

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

9B24|1|A|U|1238, 9B24|1|A|A|1261, 9B24|1|A|U|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_047 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.216

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9B24|1|A|G|1236
9B24|1|A|C|1237
9B24|1|A|U|1238
9B24|1|A|G|1239
*
9B24|1|A|C|1258
9B24|1|A|G|1259
9B24|1|A|A|1260
9B24|1|A|A|1261
9B24|1|A|U|1262
9B24|1|A|C|1263

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14B