IL_9B24_052

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

9B24|1|A|G|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_052 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1593

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9B24|1|A|U|1423
9B24|1|A|G|1424
9B24|1|A|G|1425
9B24|1|A|C|1426
*
9B24|1|A|G|1443
9B24|1|A|A|1444
9B24|1|A|G|1445

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain l

Large ribosomal subunit protein bL19