IL_9B24_060
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_060 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1336
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B24|1|U|C|72
9B24|1|U|G|73
9B24|1|U|A|74
9B24|1|U|U|75
9B24|1|U|G|76
9B24|1|U|A|77
9B24|1|U|U|78
9B24|1|U|A|79
9B24|1|U|C|80
*
9B24|1|U|G|95
9B24|1|U|A|96
9B24|1|U|A|97
9B24|1|U|A|98
9B24|1|U|A|99
9B24|1|U|G|100
9B24|1|U|U|101
9B24|1|U|A|102
9B24|1|U|G|103
Current chains
- Chain U
- 5S rRNA
Nearby chains
- Chain Y
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- Large ribosomal subunit protein uL16
- Chain r
- Large ribosomal subunit protein bL25
- Chain w
- Large ribosomal subunit protein uL30
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