IL_9B24_073

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_073 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.1835

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9B24|1|Y|C|656
9B24|1|Y|C|657
9B24|1|Y|U|658
*
9B24|1|Y|A|667
9B24|1|Y|U|668
9B24|1|Y|G|669

Current chains

Chain Y

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain h

Large ribosomal subunit protein uL15

Chain m

Large ribosomal subunit protein bL20

Chain n

Large ribosomal subunit protein bL21