IL_9B24_074

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGGAC*GUUC

Length

9 nucleotides

Bulged bases

9B24|1|Y|G|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_074 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2313

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9B24|1|Y|G|683
9B24|1|Y|G|684
9B24|1|Y|G|685
9B24|1|Y|A|686
9B24|1|Y|C|687
*
9B24|1|Y|G|778
9B24|1|Y|U|779
9B24|1|Y|U|780
9B24|1|Y|C|781

Current chains

Chain Y

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL35

Chain b

Large ribosomal subunit protein uL4

Chain h

Large ribosomal subunit protein uL15