IL_9B24_107

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

9B24|1|Y|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_107 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.3585

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9B24|1|Y|G|1434
9B24|1|Y|C|1435
9B24|1|Y|C|1436
9B24|1|Y|A|1437
9B24|1|Y|G|1438
*
9B24|1|Y|C|1446
9B24|1|Y|G|1447
9B24|1|Y|C|1448

Current chains

Chain Y

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein uL22

Chain p

Large ribosomal subunit protein uL23