IL_9B24_116

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

9B24|1|Y|U|1779

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_116 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1961

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9B24|1|Y|G|1653
9B24|1|Y|G|1654
9B24|1|Y|A|1655
9B24|1|Y|A|1656
*
9B24|1|Y|U|1777
9B24|1|Y|A|1778
9B24|1|Y|U|1779
9B24|1|Y|G|1780
9B24|1|Y|C|1781

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2