IL_9B24_117

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

9B24|1|Y|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_117 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1607

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9B24|1|Y|G|1658
9B24|1|Y|U|1659
9B24|1|Y|A|1660
9B24|1|Y|G|1661
*
9B24|1|Y|U|1771
9B24|1|Y|G|1772
9B24|1|Y|A|1773
9B24|1|Y|U|1774
9B24|1|Y|C|1775

Current chains

Chain Y

23S rRNA

Nearby chains