IL_9B24_119

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGUAG*UGAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_119 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2008

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9B24|1|Y|U|1695
9B24|1|Y|G|1696
9B24|1|Y|U|1697
9B24|1|Y|A|1698
9B24|1|Y|G|1699
*
9B24|1|Y|U|1735
9B24|1|Y|G|1736
9B24|1|Y|A|1737
9B24|1|Y|G|1738
9B24|1|Y|A|1739

Current chains

Chain Y

23S rRNA

Nearby chains