IL_9B24_125

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

9B24|1|Y|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_125 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.2739

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9B24|1|Y|C|1930
9B24|1|Y|A|1931
9B24|1|Y|U|1932
9B24|1|Y|G|1933
9B24|1|Y|G|1934
*
9B24|1|Y|U|1960
9B24|1|Y|G|1961
9B24|1|Y|A|1962
9B24|1|Y|G|1963

Current chains

Chain Y

23S rRNA

Nearby chains