IL_9B24_129
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UGCGAAG*CGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9B24|1|Y|G|2018, 9B24|1|Y|U|2033, 9B24|1|Y|U|2037
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_129 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.2003
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|U|2015
9B24|1|Y|G|2016
9B24|1|Y|C|2017
9B24|1|Y|G|2018
9B24|1|Y|A|2019
9B24|1|Y|A|2020
9B24|1|Y|G|2021
*
9B24|1|Y|C|2030
9B24|1|Y|G|2031
9B24|1|Y|A|2032
9B24|1|Y|U|2033
9B24|1|Y|G|2034
9B24|1|Y|U|2035
9B24|1|Y|A|2036
9B24|1|Y|U|2037
9B24|1|Y|A|2038
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Large ribosomal subunit protein uL2
Coloring options: