IL_9B24_161

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9B24|1|Y|C|2950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_161 not in the Motif Atlas

Homologous match to IL_9DFE_103

Geometric discrepancy: 0.2013

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9B24|1|Y|C|2904
9B24|1|Y|C|2905
9B24|1|Y|U|2906
9B24|1|Y|C|2907
9B24|1|Y|U|2908
*
9B24|1|Y|A|2949
9B24|1|Y|C|2950
9B24|1|Y|G|2951

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain g

Large ribosomal subunit protein uL14

Chain l

Large ribosomal subunit protein bL19