IL_9B24_162

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

9B24|1|Y|U|2913, 9B24|1|Y|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_162 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2113

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9B24|1|Y|U|2911
9B24|1|Y|A|2912
9B24|1|Y|U|2913
9B24|1|Y|A|2914
9B24|1|Y|C|2915
*
9B24|1|Y|G|2942
9B24|1|Y|A|2943
9B24|1|Y|U|2944
9B24|1|Y|A|2945
9B24|1|Y|G|2946

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein bL17

Chain l

Large ribosomal subunit protein bL19