IL_9B24_166

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_166 not in the Motif Atlas

Homologous match to IL_7A0S_100

Geometric discrepancy: 0.244

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9B24|1|Y|G|3064
9B24|1|Y|A|3065
9B24|1|Y|C|3066
*
9B24|1|Y|G|3092
9B24|1|Y|A|3093
9B24|1|Y|A|3094
9B24|1|Y|C|3095

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein bL17

Chain l

Large ribosomal subunit protein bL19