IL_9B4Z_035

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9B4Z|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_035 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.0698

The information below is about IL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

9B4Z|1|AA|U|684
9B4Z|1|AA|G|685
9B4Z|1|AA|U|686
9B4Z|1|AA|A|687
9B4Z|1|AA|G|688
*
9B4Z|1|AA|C|699
9B4Z|1|AA|G|700
9B4Z|1|AA|U|701
9B4Z|1|AA|A|702
9B4Z|1|AA|G|703
9B4Z|1|AA|A|704
9B4Z|1|AA|G|705
9B4Z|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA