IL_9B4Z_057

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9B4Z|1|AA|C|1400, 9B4Z|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_057 not in the Motif Atlas

Geometric match to IL_8GLP_274

Geometric discrepancy: 0.033

The information below is about IL_8GLP_274

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9B4Z|1|AA|C|1399
9B4Z|1|AA|C|1400
9B4Z|1|AA|G|1401
*
9B4Z|1|AA|C|1501
9B4Z|1|AA|A|1502
9B4Z|1|AA|A|1503
9B4Z|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA