IL_9B50_009

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

9B50|1|AA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_009 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.0585

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9B50|1|AA|G|128
9B50|1|AA|A|129
9B50|1|AA|A|130
9B50|1|AA|A|131
*
9B50|1|AA|U|231
9B50|1|AA|G|232
9B50|1|AA|C|233

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20