IL_9B50_012

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9B50|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_012 not in the Motif Atlas

Geometric match to IL_8B0X_012

Geometric discrepancy: 0.0731

The information below is about IL_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9B50|1|AA|G|147
9B50|1|AA|G|148
9B50|1|AA|A|149
9B50|1|AA|U|150
9B50|1|AA|A|151
9B50|1|AA|A|152
9B50|1|AA|C|153
*
9B50|1|AA|G|168
9B50|1|AA|C|169
9B50|1|AA|U|170
9B50|1|AA|A|171
9B50|1|AA|A|172
9B50|1|AA|U|173
9B50|1|AA|A|174
9B50|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20