IL_9B50_047

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9B50|1|AA|C|1200, 9B50|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_047 not in the Motif Atlas

Geometric match to IL_8B0X_047

Geometric discrepancy: 0.0924

The information below is about IL_8B0X_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9B50|1|AA|G|1057
9B50|1|AA|G|1058
*
9B50|1|AA|U|1199
9B50|1|AA|C|1200
9B50|1|AA|A|1201
9B50|1|AA|U|1202
9B50|1|AA|C|1203

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14