IL_9B50_066

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_066 not in the Motif Atlas

Geometric match to IL_8B0X_065

Geometric discrepancy: 0.0522

The information below is about IL_8B0X_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9B50|1|BA|G|24
9B50|1|BA|U|25
9B50|1|BA|G|26
9B50|1|BA|G|27
9B50|1|BA|A|28
9B50|1|BA|U|29
9B50|1|BA|G|30
*
9B50|1|BA|C|510
9B50|1|BA|U|511
9B50|1|BA|G|512
9B50|1|BA|A|513
9B50|1|BA|A|514
9B50|1|BA|A|515
9B50|1|BA|C|516

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22