IL_9B50_103

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9B50|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_103 not in the Motif Atlas

Geometric match to IL_8B0X_102

Geometric discrepancy: 0.0564

The information below is about IL_8B0X_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|G|1031
9B50|1|BA|A|1032
9B50|1|BA|U|1033
9B50|1|BA|G|1034
*
9B50|1|BA|C|1121
9B50|1|BA|G|1122
9B50|1|BA|C|1123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BB

5S ribosomal RNA

Chain BM

50S ribosomal protein L16