IL_9B50_105

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9B50|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_105 not in the Motif Atlas

Geometric match to IL_8B0X_104

Geometric discrepancy: 0.1315

The information below is about IL_8B0X_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9B50|1|BA|C|1043
9B50|1|BA|C|1044
9B50|1|BA|C|1045
9B50|1|BA|A|1046
9B50|1|BA|G|1047
9B50|1|BA|A|1048
9B50|1|BA|C|1049
9B50|1|BA|A|1050
9B50|1|BA|G|1051
*
9B50|1|BA|U|1108
9B50|1|BA|C|1109
9B50|1|BA|G|1110
9B50|1|BA|A|1111
9B50|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6