IL_9B50_109

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9B50|1|BA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_109 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.0484

The information below is about IL_8B0X_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9B50|1|BA|C|1208
9B50|1|BA|U|1209
9B50|1|BA|G|1210
9B50|1|BA|C|1211
9B50|1|BA|G|1212
9B50|1|BA|A|1213
9B50|1|BA|A|1214
9B50|1|BA|G|1215
*
9B50|1|BA|U|1234
9B50|1|BA|G|1235
9B50|1|BA|G|1236
9B50|1|BA|A|1237
9B50|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20