IL_9B50_130

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9B50|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_130 not in the Motif Atlas

Geometric match to IL_8B0X_127

Geometric discrepancy: 0.0593

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9B50|1|BA|C|1686
9B50|1|BA|G|1687
9B50|1|BA|U|1688
9B50|1|BA|A|1689
9B50|1|BA|A|1690
9B50|1|BA|C|1691
*
9B50|1|BA|G|1696
9B50|1|BA|G|1697
9B50|1|BA|A|1698
9B50|1|BA|G|1699
9B50|1|BA|A|1700
9B50|1|BA|A|1701
9B50|1|BA|G|1702

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

16S ribosomal RNA

Chain BC

50S ribosomal protein L2