IL_9B50_131

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9B50|1|BA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_131 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0466

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9B50|1|BA|U|1712
9B50|1|BA|A|1713
9B50|1|BA|U|1714
9B50|1|BA|G|1715
9B50|1|BA|U|1716
9B50|1|BA|A|1717
9B50|1|BA|G|1718
*
9B50|1|BA|U|1742
9B50|1|BA|G|1743
9B50|1|BA|A|1744
9B50|1|BA|A|1745
9B50|1|BA|A|1746

Current chains

Chain BA

23S ribosomal RNA

Nearby chains