IL_9B50_135

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9B50|1|BA|A|1801, 9B50|1|BA|C|1816, 9B50|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_135 not in the Motif Atlas

Geometric match to IL_8B0X_132

Geometric discrepancy: 0.0497

The information below is about IL_8B0X_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9B50|1|BA|U|1798
9B50|1|BA|G|1799
9B50|1|BA|C|1800
9B50|1|BA|A|1801
9B50|1|BA|A|1802
9B50|1|BA|A|1803
9B50|1|BA|C|1804
*
9B50|1|BA|G|1813
9B50|1|BA|G|1814
9B50|1|BA|A|1815
9B50|1|BA|C|1816
9B50|1|BA|G|1817
9B50|1|BA|U|1818
9B50|1|BA|A|1819
9B50|1|BA|U|1820
9B50|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2